Mutube - mutube.com - Martin Fitzpatrick
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Cytoscape v3.0.2 on Mac OS X 8 Aug 2013 | 02:45 pm
Cytoscape 3.0.2 was released on 1st August, a bugfix release for the 3.x series. However, there is a compatibility issue with the latest Java update from Apple resulting in Cytoscape hanging on startu...
MetaPath v0.7.0 Released 3 Jul 2013 | 03:03 pm
An update has been released today for MetaPath, a metabolic pathway visualisation and analysis tool. It is available via PyPi and github. A Mac .app bundle is also available. Download Mac OS X Mounta...
MetaPath v0.6.0 Released 20 Jun 2013 | 08:55 pm
An update has been released today for MetaPath, a metabolic pathway visualisation and analysis tool. It is available via PyPi and github. A Mac .app bundle is also available. Download Mac OS X Mounta...
accuri2fcs: Convert Accuri .c6 flow cytometry files to .fcs [Released] 18 Jun 2013 | 02:44 am
Accuri2fcs, a command line program for the conversion of Accuri .c6 flow cytometry data files to the standard .fcs format, has been released today via github and PyPi. Background Someone in our lab ...
gpml2svg: A command-line SVG renderer for GPML pathways [Released] 16 Jun 2013 | 11:09 pm
Gpml2svg, a command-line/Python API for rendering GPML pathway markup to SVG, has been released today via github and PyPi. Background In order to add support for GPML pathways (and later KEGG) in Me...
cx_Freeze and PySide on Mac 18 May 2013 | 01:00 pm
I’d had success using py2app for building Mac binaries for distribution but wanted to give cx_Freeze a go since it’s cross platform - allowing builds for Windows, Linux, and more. Unfortunately, attem...
MetaPath: Metabolic pathway visualisation and analysis [Released] 9 Apr 2013 | 07:00 pm
MetaPath, a metabolic pathway visualisation and analysis tool I’ve developed as part of my PhD, has been released today via PyPi and github. A Mac .app bundle is also available. Download Mac OS X Mou...
Pelicans on Webfaction 7 Apr 2013 | 01:00 pm
As mentioned in the previous post, I recently migrated this site over to the very clever Pelican. Setting it up was relatively straightforward using a combination of the official docs, this post and l...
Now with 100% more Pelican 6 Apr 2013 | 07:55 pm
Regulars among you will have noticed that the site is different, very different. The Game of Life Science site has a long and convoluted history. Back in 2009 while an undergraduate I had the bright ...
Speed up MATLAB on MacOS X 24 Mar 2013 | 04:03 pm
On MacOS X 10.5 there is considerable slow-down in the MATLAB editor and other GUI elements. The issue is related to a change in the default Mac Java 2D rendering engine from Quartz2D (10.4) and Sun2D...
